- Class: 3
- Architecture: 3.40:3-Layer(aba) Sandwich
- Topology: 3.40.50:Rossmann fold
- Homology: 3.40.50.170:Formyl transferase, N-terminal domain
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1c2t | [A2] | [A2] | [A2] | 2.1 | GAR:GLYCINAMIDE RIBONUCLEOTIDE NHS:10-FORMYL-5,8,10-TRIDEAZAFOLIC ACID | |||
1c3e | [A2] | [A2] | [A2] | 2.1 | GAR:GLYCINAMIDE RIBONUCLEOTIDE NHR:2-{4-[2-(2-AMINO-4-HYDROXY-QUINAZOLIN-6-YL)-1-CARBOXY-ETHYL]-BENZOYLAMINO}-PENTANEDIOIC ACID | |||
1cdd | [A2] | [A2] | [A2] | 2.8 | PO4:PHOSPHATE ION | |||
1cde | [A] | [A] | [A] | 2.5 | DZF:5-DEAZAFOLIC ACID GAR:GLYCINAMIDE RIBONUCLEOTIDE | |||
1fmt | [A] | [A] | [A] | 2 | ||||
1gar | [A2] | [A2] | [A2] | 1.96 | U89:N-[4-[[3-(2,4-DIAMINO-1,6-DIHYDRO-6-OXO-4-PYRIMIDINYL)-PROPYL]-[2-((2-OXO-2-((4-PHOSPHORIBOXY)-BUTYL)-AMINO)-ETHYL)-THIO-ACETYL]-AMINO]BENZOYL]-1-GLUTAMIC ACID | |||
1grc | [A2] | [A2] | [A2] | 3 | PO4:PHOSPHATE ION | |||
1jkx | [A2] | [A2] | [A2] | 1.6 | 138:N-[5___sq___-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY-QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE | |||
1mej | [A] | [A] | [A] | 2 | GOL:GLYCEROL PO4:PHOSPHATE ION | |||
1men | [A] | [A] | [A] | 2.23 | GAR:GLYCINAMIDE RIBONUCLEOTIDE | |||
1meo | [A] | [A] | [A] | 1.72 | PO4:PHOSPHATE ION SO4:SULFATE ION | |||
1njs | [A] | [A] | [A] | 1.98 | KEU:N-{4-[(1R)-4-[(2R,4R,5S)-2,4-DIAMINO-6-OXOHEXAHYDROPYRIMIDIN-5-YL]-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXYETHYL)BUTYL]BENZOYL}-D-GLUTAMIC ACID PO4:PHOSPHATE ION | |||
1rbm | [A] | [A] | [A] | 2.3 | KT5:N-{4-4-(2,4-DIAMINO-6-OXO-1,6-DIHYDRO-PYRIMIDIN-5-YL)-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXY-ETHYL)-BUT-2-YL-BENZOYL}-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GLUTAMIC ACID PO4:PHOSPHATE ION | |||
1rbq | [A] | [A] | [A] | 2.1 | KEU:N-{4-[(1R)-4-[(2R,4R,5S)-2,4-DIAMINO-6-OXOHEXAHYDROPYRIMIDIN-5-YL]-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXYETHYL)BUTYL]BENZOYL}-D-GLUTAMIC ACID PO4:PHOSPHATE ION | |||
1rby | [A] | [A] | [A] | 2.1 | GAR:GLYCINAMIDE RIBONUCLEOTIDE KEU:N-{4-[(1R)-4-[(2R,4R,5S)-2,4-DIAMINO-6-OXOHEXAHYDROPYRIMIDIN-5-YL]-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXYETHYL)BUTYL]BENZOYL}-D-GLUTAMIC ACID | |||
1rbz | [A] | [A] | [A] | 2.1 | KT5:N-{4-4-(2,4-DIAMINO-6-OXO-1,6-DIHYDRO-PYRIMIDIN-5-YL)-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXY-ETHYL)-BUT-2-YL-BENZOYL}-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GLUTAMIC ACID | |||
1rc0 | [A] | [A] | [A] | 2.05 | KT5:N-{4-4-(2,4-DIAMINO-6-OXO-1,6-DIHYDRO-PYRIMIDIN-5-YL)-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXY-ETHYL)-BUT-2-YL-BENZOYL}-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GLUTAMIC ACID | |||
1rc1 | [A] | [A] | [A] | 2.25 | KT3:N-{4-4-(2,4-DIAMINO-6-OXO-1,6-DIHYDRO-PYRIMIDIN-5-YL)-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXY-ETHYL)-BUT-2-YL-BENZOYL}-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GLUTAMIC ACID PO4:PHOSPHATE ION | |||
1s3i | [A] | [A] | [A] | 2.3 | BME:BETA-MERCAPTOETHANOL | |||
1yrw | [A] | [A] | [A] | 1.7 | ||||
1zgh | [A] | [A] | [A] | 2.05 | MSE:SELENOMETHIONINE UNX:UNKNOWN ATOM OR ION | |||
1zlx | [A] | [A] | [A] | 2.2 | GOL:GLYCEROL MSE:SELENOMETHIONINE | |||
1zly | [A] | [A] | [A] | 2.07 | DQB:4-[(4-{[(2-AMINO-4-OXO-3,4-DIHYDROQUINAZOLIN-6-YL)METHYL]AMINO}BENZOYL)AMINO]BUTANOIC ACID GRF:5-O-PHOSPHONO-BETA-D-RIBOFURANOSYLAMINE | |||
2bln | [A] | [A] | [A] | 1.2 | ACT:ACETATE ION FON:FOLINIC ACID U5P:URIDINE-5___sq___-MONOPHOSPHATE | |||
2bw0 | [A] | [A] | [A] | 1.7 | SO4:SULFATE ION | |||
2cfi | [A] | [A] | [A] | 1.85 | SO4:SULFATE ION ZZZ:6-FORMYLTETRAHYDROPTERIN | |||
2fmt | [A](a) | [A](a) | [A](a) | 2.8 | 4SU:4-THIOURIDINE-5___sq___-MONOPHOSPHATE 5MU:5-METHYLURIDINE 5___sq___-MONOPHOSPHATE FME:N-FORMYLMETHIONINE H2U:5,6-DIHYDROURIDINE-5___sq___-MONOPHOSPHATE MG:MAGNESIUM ION OMC:O2___sq___-METHYLYCYTIDINE-5___sq___-MONOPHOSPHATE PSU:PSEUDOURIDINE-5___sq___-MONOPHOSPHATE | |||
2gar | [A] | [A] | [A] | 1.8 | PO4:PHOSPHATE ION | |||
2ywr | [A] | [A] | [A] | 1.77 | CO:COBALT (II) ION MG:MAGNESIUM ION MSE:SELENOMETHIONINE | |||
3auf | [A2] | [A2] | [A2] | 2.07 | ||||
3av3 | [A] | [A] | [A] | 1.7 | MG:MAGNESIUM ION MSE:SELENOMETHIONINE | |||
3da8 | [A2] | [A2] | [A2] | 1.3 | BME:BETA-MERCAPTOETHANOL IOD:IODIDE ION MG:MAGNESIUM ION | |||
3dcj | [A2] | [A2] | [A2] | 2.2 | CL:CHLORIDE ION MG:MAGNESIUM ION NO3:NITRATE ION THH:N-[4-({[(6S)-2-AMINO-4-HYDROXY-5-METHYL-5,6,7,8-TETRAHYDROPTERIDIN-6-YL]METHYL}AMINO)BENZOYL]-L-GLUTAMIC ACID | |||
3gar | [A2] | [A2] | [A2] | 1.9 | PO4:PHOSPHATE ION | |||
3kcq | [A2] | [A2] | [A2] | 2.2 | GOL:GLYCEROL | |||
3lou | [A4] | [A4] | [A4] | 1.9 | EDO:1,2-ETHANEDIOL MSE:SELENOMETHIONINE PEG:DI(HYDROXYETHYL)ETHER SO4:SULFATE ION UNL:UNKNOWN LIGAND | |||
3n0v | [A4] | [A4] | [A4] | 2.25 | MSE:SELENOMETHIONINE | |||
3nrb | [A4] | [A4] | [A4] | 2.05 | EDO:1,2-ETHANEDIOL FLC:CITRATE ANION IMD:IMIDAZOLE MSE:SELENOMETHIONINE NA:SODIUM ION UNL:UNKNOWN LIGAND | |||
3o1l | [A2] | [A2] | [A2] | 2.2 | GOL:GLYCEROL MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
3obi | [A4] | [A4] | [A4] | 1.95 | EDO:1,2-ETHANEDIOL MSE:SELENOMETHIONINE | |||
3p9x | [A2] | [A2] | [A2] | 1.9 | GOL:GLYCEROL SO4:SULFATE ION | |||
3q0i | [A] | [A] | [A] | 1.89 | GOL:GLYCEROL MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
3r8x | [A] | [A] | [A] | 2.26 | GOL:GLYCEROL MET:METHIONINE MOE:METHOXY-ETHOXYL TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
3tqq | [A] | [A] | [A] | 2 | K:POTASSIUM ION MSE:SELENOMETHIONINE | |||
3tqr | [A] | [A] | [A] | 1.97 | CL:CHLORIDE ION MSE:SELENOMETHIONINE NHE:2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID | |||
3w7b | [A4] | [A4] | [A4] | 2.71 | ||||
4ds3 | [A2] | [A2] | [A2] | 1.85 | CL:CHLORIDE ION GOL:GLYCEROL SO4:SULFATE ION | |||
4ew1 | [A] | [A] | [A] | 1.52 | PO4:PHOSPHATE ION SO4:SULFATE ION | |||
4ew2 | [A] | [A] | [A] | 1.6 | DXY:N-({4-[(1S)-4-(2,4-DIAMINO-6-OXO-1,6-DIHYDROPYRIMIDIN-5-YL)-1-(METHYLSULFANYL)BUTYL]PHENYL}CARBONYL)-L-GLUTAMIC ACID PO4:PHOSPHATE ION SO4:SULFATE ION | |||
4ew3 | [A] | [A] | [A] | 1.7 | DXZ:N-({4-[(1R)-4-(2,4-DIAMINO-6-OXO-1,6-DIHYDROPYRIMIDIN-5-YL)-1-(METHYLSULFANYL)BUTYL]PHENYL}CARBONYL)-L-GLUTAMIC ACID PO4:PHOSPHATE ION SO4:SULFATE ION | |||
4iqf | [A] | [A] | [A] | 2.38 | GOL:GLYCEROL MSE:SELENOMETHIONINE PG5:1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE SO4:SULFATE ION | |||
4nv1 | [A2] | [A2] | [A2] | 2.1 | 0FX:DTDP-4-AMINO-4,6-DIDEOXYGLUCOSE 4TG:DTDP-4,6-DIDEOXY-4-FORMAMIDO-GLUCOSE PO4:PHOSPHATE ION TYD:THYMIDINE-5___sq___-DIPHOSPHATE | |||
4pzu | [A2] | [A2] | [A2] | 2.1 | EDO:1,2-ETHANEDIOL | |||
4q12 | [A2] | [A2] | [A2] | 2.85 | CL:CHLORIDE ION EDO:1,2-ETHANEDIOL UDP:URIDINE-5___sq___-DIPHOSPHATE | |||
4qpc | [A] | [A] | [A] | 1.9 | ||||
4qpd | [A] | [A] | [A] | 2.1 | PEG:DI(HYDROXYETHYL)ETHER THG:(6S)-5,6,7,8-TETRAHYDROFOLATE | |||
4r8v | [A] | [A] | [A] | 2.2 | BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL FMT:FORMIC ACID PEG:DI(HYDROXYETHYL)ETHER | |||
4s1n | [A] | [A] | [A] | 2.7 | CL:CHLORIDE ION MSE:SELENOMETHIONINE | |||
4ts4 | [A] | [A] | [A] | 1.75 | ||||
4tt8 | [A] | [A] | [A] | 2.3 | 6DD:N-(4-{[(2-AMINO-4-HYDROXYQUINAZOLIN-6-YL)METHYL](FORMYL)AMINO}BENZOYL)-L-GLUTAMIC ACID BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
4tts | [A] | [A] | [A] | 2 | 6DD:N-(4-{[(2-AMINO-4-HYDROXYQUINAZOLIN-6-YL)METHYL](FORMYL)AMINO}BENZOYL)-L-GLUTAMIC ACID | |||
4yfv | [A2] | [A2] | [A2] | 1.89 | CL:CHLORIDE ION EDO:1,2-ETHANEDIOL | |||
4yfy | [A2] | [A2] | [A2] | 1.9 | 0FX:DTDP-4-AMINO-4,6-DIDEOXYGLUCOSE 1YJ:N-[4-({[(6R)-2-AMINO-4-OXO-3,4,5,6,7,8-HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)BENZOYL]-L-GLUTAMIC ACID CL:CHLORIDE ION EDO:1,2-ETHANEDIOL | |||
4zyt | [A] | [A] | [A] | 1.7 | 3Y9:N-{4-[4-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-6-YL)BUTYL]BENZOYL}-L-GLUTAMIC ACID GAR:GLYCINAMIDE RIBONUCLEOTIDE | |||
4zyu | [A] | [A] | [A] | 1.95 | 3YA:N-{4-[4-(2-AMINO-4-OXO-1,4-DIHYDROTHIENO[2,3-D]PYRIMIDIN-6-YL)BUTYL]BENZOYL}-L-GLUTAMIC ACID GAR:GLYCINAMIDE RIBONUCLEOTIDE | |||
4zyv | [A] | [A] | [A] | 2.05 | G71:N-({5-[4-(2-AMINO-4-OXO-4,7-DIHYDRO-1H-PYRROLO[2,3-D]PYRIMIDIN-6-YL)BUTYL]THIOPHEN-2-YL}CARBONYL)-L-GLUTAMIC ACID GAR:GLYCINAMIDE RIBONUCLEOTIDE | |||
4zyw | [A] | [A] | [A] | 2.05 | G94:N-({5-[3-(2-AMINO-4-OXO-4,7-DIHYDRO-1H-PYRROLO[2,3-D]PYRIMIDIN-6-YL)PROPYL]THIOPHEN-2-YL}CARBONYL)-L-GLUTAMIC ACID GAR:GLYCINAMIDE RIBONUCLEOTIDE | |||
4zyx | [A] | [A] | [A] | 1.65 | 3YB:N-({4-[4-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-6-YL)BUTYL]THIOPHEN-2-YL}CARBONYL)-L-GLUTAMIC ACID GAR:GLYCINAMIDE RIBONUCLEOTIDE | |||
4zyy | [A] | [A] | [A] | 1.85 | 3YC:(S)-2-({5-[4-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]-PYRIMIDIN-6-YL)BUTYL]THIOPHENE-3-CARBONYL}AMINO)PENTANEDIOIC ACID GAR:GLYCINAMIDE RIBONUCLEOTIDE | |||
4zyz | [A] | [A] | [A] | 1.6 | 3YD:(S)-2-(7-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-6-YL)HEPTANAMIDO)PENTANEDIOIC ACID GAR:GLYCINAMIDE RIBONUCLEOTIDE | |||
4zz0 | [A] | [A] | [A] | 1.65 | 3YE:(S)-2-(8-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-6-YL)OCTANAMIDO)PENTANEDIOIC ACID GAR:GLYCINAMIDE RIBONUCLEOTIDE | |||
4zz1 | [A] | [A] | [A] | 1.35 | 3YF:(S)-2-({4-[3-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-6-YL)-PROPYL]-THIOPHENE-2-CARBONYL}-AMINO)-PENTANEDIOIC ACID GAR:GLYCINAMIDE RIBONUCLEOTIDE | |||
4zz2 | [A] | [A] | [A] | 1.45 | 3YG:(S)-2-({5-[3-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-6-YL)-PROPYL]-THIOPHENE-3-CARBONYL}-AMINO)-PENTANEDIOIC ACID GAR:GLYCINAMIDE RIBONUCLEOTIDE | |||
4zz3 | [A] | [A] | [A] | 2.5 | 4DW:N-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)ETHYL]BENZOYL}-L-GLUTAMIC ACID GAR:GLYCINAMIDE RIBONUCLEOTIDE | |||
5cjj | [A2] | [A2] | [A2] | 2.42 | CL:CHLORIDE ION GOL:GLYCEROL MSE:SELENOMETHIONINE PEG:DI(HYDROXYETHYL)ETHER SO4:SULFATE ION | |||
5j63 | [A] | [A] | [A] | 2.5 | FNX:(4AS,6S)-2-AMINO-6-{(E)-[(4-METHYLPHENYL)IMINO]METHYL}-4-OXO-4,6,7,8-TETRAHYDROPTERIDINE-5(4AH)-CARBALDEHYDE G3N:(2R,3R,4S,5S)-5-AMINO-3,4-DIHYDROXYTETRAHYDRO-2H-PYRAN-2-YL [(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYLDIHYDROGEN DIPHOSPHATE | |||
5j9f | [A] | [A] | [A] | 2.1 | 83A:N-(4-{[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-6-YL)ETHYL]AMINO}BENZENE-1-CARBONYL)-L-GLUTAMIC ACID GAR:GLYCINAMIDE RIBONUCLEOTIDE | |||
5uai | [A] | [A] | [A] | 2.75 | EDO:1,2-ETHANEDIOL | |||
5vyq | [A2] | [A2] | [A2] | 1.6 | 0FX:DTDP-4-AMINO-4,6-DIDEOXYGLUCOSE CL:CHLORIDE ION EDO:1,2-ETHANEDIOL EP1:3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONICACID FON:N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-OXO-1,4,5,6,7,8-HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)PHENYL]CARBONYL}-L-GLUTAMIC ACID K:POTASSIUM ION LI:LITHIUM ION NA:SODIUM ION TYD:THYMIDINE-5___sq___-DIPHOSPHATE | |||
6nbp | [A2] | [A2] | [A2] | 1.7 | 0FX:DTDP-4-AMINO-4,6-DIDEOXYGLUCOSE FON:N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-OXO-1,4,5,6,7,8-HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)PHENYL]CARBONYL}-L-GLUTAMIC ACID NA:SODIUM ION PO4:PHOSPHATE ION |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA